Stem-loop spu-mir-34

Accession

MI0010195

Description

Strongylocentrotus purpuratus spu-mir-34 precursor miRNA mir-34

Gene
family

RF00456; mir-34

Sequence

ccugauuggcugccuuccuuCGGCAGUGUAGUUAGCUGGUUGuuuucgaccaaucaccaaccagcuugcugcagggccccaggaaggagucuugaaaucuu
...((((((((.(((((((..(((..((((((.(((((((((...............))))))))).))))))..)))..)))))))))))....))))..

Structure

ccu    ----    g       uC   AG      U         uuuucg 
   gauu    ggcu ccuuccu  GGC  UGUAGU AGCUGGUUG      a
   ||||    |||| |||||||  |||  |||||| |||||||||      c
   cuaa    cuga ggaagga  ccg  acgucg ucgaccaac      c
-uu    aguu    -       cc   gg      u         cacuaa 

Annotation confidence Low

Genome context

KN916283.1: 1153963-1154063 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from spu-mir-34

Mature spu-miR-34

• Accession: MIMAT0009659
• Description: Strongylocentrotus purpuratus spu-miR-34 mature miRNA
• Sequence: 21 - CGGCAGUGUAGUUAGCUGGUUG - 42
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68