Stem-loop aga-mir-965-1

Accession

MI0010602

Description

Anopheles gambiae aga-mir-965-1 precursor miRNA

Literature search

1 open access papers mention aga-mir-965-1
(4 sentences)

Sequence

cgaaguaaaucgacgaauucugaaAGGGGAAUGCUGUACACUCUAugugcuaaaaauauccaUAAGCGUAUAGCUUUUCCCAUUuagcguucguugcgagcaaa
....((....((((((((.(((((.((((((.(((((((.((.((((.(.((....)).))))))).))))))).)))))).))))).))))))))...))...

Structure

cgaa  aaau        u     A      U       A  C    u c  a 
    gu    cgacgaau cugaa GGGGAA GCUGUAC CU UAug g ua a
    ||    |||||||| ||||| |||||| ||||||| || |||| | ||  
    cg    guugcuug gauUU CCCUUU CGAUAUG GA AUac c au a
-aaa  -agc        c     A      U       C  -    - u  a 

Annotation confidence Not enough data

Genome context

chr3R: 11096169-11096272 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aga-mir-965-1

Mature aga-miR-965-3p

• Accession: MIMAT0010108
• Description: Anopheles gambiae aga-miR-965-3p mature miRNA
• Sequence: 63 - UAAGCGUAUAGCUUUUCCCAUU - 84
• Evidence: experimental ; Illumina [1]

Mature aga-miR-965-5p

• Accession: MIMAT0037353
• Description: Anopheles gambiae aga-miR-965-5p mature miRNA
• Sequence: 25 - AGGGGAAUGCUGUACACUCUA - 45
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25766668
   The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
   Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T
   BMC Genomics (2015) 16:100