Stem-loop dps-mir-989

Accession

MI0011591

Description

Drosophila pseudoobscura dps-mir-989 precursor miRNA

Literature search

1 open access papers mention dps-mir-989
(1 sentences)

Sequence

461738 reads, 3332.0 reads per million, 20 experiments

acguugcgggaaugGGCCACUACCUCGCAGUCACGUGauaucggaaugcaaugaucuacguuaaauuguguuucuuuuugaauaguucaUGUGAUGUGACGUAGUGGAACAuuccuggcg
.(((..((((((((..(((((((.(((((.((((((((....((((((((((............))))))))))............))))))))))))).)))))))..)))))))))))

Structure

a   ug        GG       C     G        --------uauc          gaucu 
 cgu  cgggaaug  CCACUAC UCGCA UCACGUGa            ggaaugcaau     a
 |||  ||||||||  ||||||| ||||| ||||||||            ||||||||||      
 gcg  guccuuAC  GGUGAUG AGUGU AGUGUacu            cuuuguguua     c
-   --        AA       C     -        ugauaaguuuuu          aauug 

Annotation confidence High

Genome context

ref|NC_046680.1|: 6414744-6414863 [-]

Mature dps-miR-989-5p

• Accession: MIMAT0053418
• Description: Drosophila pseudoobscura dps-miR-989-5p mature miRNA
• Sequence: 15 - GGCCACUACCUCGCAGUCACGUG - 37
• Evidence: experimental ; Illumina [1]

Mature dps-miR-989-3p

• Accession: MIMAT0012218
• Description: Drosophila pseudoobscura dps-miR-989-3p mature miRNA
• Sequence: 90 - UGUGAUGUGACGUAGUGGAACA - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9