miRBase entry: dps-mir-311

Stem-loop dps-mir-311

Accession

MI0011603

Description

Drosophila pseudoobscura dps-mir-311 precursor miRNA

Sequence

guguauucguguucgguggauaccuucAAGCUGGGGGAUGGGCAAUACUguguuguauuucaccagUAUUGCACACCCACUGGCCUGAaagugccuacugcuggguucaac
.((.(((((.((..(((((.(((.((((.((((((((.((.(((((((((((........)).))))))))).))))).))))).)))).))).)))))))))))).))..

Structure

-g  u     u  uc     a   c    A     -   A  G         -  uug 
  ug auucg gu  ggugg uac uucA GCUGG GGG UG GCAAUACUg ug   u
  || ||||| ||  ||||| ||| |||| ||||| ||| || ||||||||| ||    
  ac ugggu cg  ucauc gug aAGU CGGUC CCC AC CGUUAUgac ac   a
ca  u     -  --     c   a    C     A   -  A         c  uuu

Annotation confidence Not enough data

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Genome context

3: 8679717-8679827 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from dps-mir-311

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-311-5p

Accession	MIMAT0012241
Description	Drosophila pseudoobscura dps-miR-311-5p mature miRNA
Sequence	28 - AAGCUGGGGGAUGGGCAAUACU - 49
Evidence	experimental Illumina [1]

Mature dps-miR-311-3p

Accession	MIMAT0012242
Description	Drosophila pseudoobscura dps-miR-311-3p mature miRNA
Sequence	67 - UAUUGCACACCCACUGGCCUGA - 88
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9