Stem-loop dps-mir-1006

Accession

MI0011608

Description

Drosophila pseudoobscura dps-mir-1006 precursor miRNA

Sequence

46197 reads, 293.0 reads per million, 20 experiments

gcgucaacuuucagGUGAGUUUGAAAUUGAAAUGUGUaaauuguuugugccaauuUAAAUUCGAUUUCUUAUUCAUAGgugc
......((((....((((((..(((((((((.....(((((((.......)))))))..)))))))))..))))))))))..

Structure

gcguca    ucag      UU         AUGUG       uu 
      acuu    GUGAGU  GAAAUUGAA     Uaaauug  u
      ||||    ||||||  |||||||||     |||||||  g
      ugGA    UACUUA  CUUUAGCUU     AUuuaac  u
----cg    ----      UU         ---AA       cg 

Annotation confidence High

Genome context

ref|NC_046681.1|: 20903167-20903248 [+]

Mature dps-miR-1006-5p

• Accession: MIMAT0012251
• Description: Drosophila pseudoobscura dps-miR-1006-5p mature miRNA
• Sequence: 15 - GUGAGUUUGAAAUUGAAAUGUGU - 37
• Evidence: experimental ; Illumina [1]

Mature dps-miR-1006-3p

• Accession: MIMAT0012252
• Description: Drosophila pseudoobscura dps-miR-1006-3p mature miRNA
• Sequence: 56 - UAAAUUCGAUUUCUUAUUCAUAG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9