Stem-loop dps-mir-1000

Accession

MI0011615

Description

Drosophila pseudoobscura dps-mir-1000 precursor miRNA

Sequence

816084 reads, 5020.0 reads per million, 22 experiments

ggcgcuugccauugAUAUUGUCCUGUCACAGCAGUauuguaacuuaauuauagccuaCUGCUGGGUCGGGGCAUUAACAuuguugagcgcc
((((((((.((.((.((.(((((((.(.((((((((((((((.....))))))..)))))))).).))))))).)).)).)).))))))))

Structure

        c  u  A  U       U A        --      c 
ggcgcuug ca ug UA UGUCCUG C CAGCAGUa  uuguaa u
|||||||| || || || ||||||| | ||||||||  |||||| u
ccgcgagu gu AC AU ACGGGGC G GUCGUCau  gauauu a
        u  u  A  U       U G        cc      a 

Annotation confidence High

Genome context

ref|NC_046679.1|: 22035532-22035622 [-]

Mature dps-miR-1000-5p

• Accession: MIMAT0012265
• Description: Drosophila pseudoobscura dps-miR-1000-5p mature miRNA
• Sequence: 15 - AUAUUGUCCUGUCACAGCAGU - 35
• Evidence: experimental ; Illumina [1]

Mature dps-miR-1000-3p

• Accession: MIMAT0012266
• Description: Drosophila pseudoobscura dps-miR-1000-3p mature miRNA
• Sequence: 58 - CUGCUGGGUCGGGGCAUUAACA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9