Stem-loop dps-mir-1010

Accession

MI0011619

Description

Drosophila pseudoobscura dps-mir-1010 precursor miRNA

Literature search

1 open access papers mention dps-mir-1010
(1 sentences)

Sequence

124403 reads, 749.0 reads per million, 22 experiments

cguccguguucgugcucaacggGUAAGUGGUGUAGAUGAAACAaauuaaccaaccuuuauuguguuggauugUUUCACCUAUCGUUCCAUUUGCAGguacgaggau
.((((....(((((((......((((((((.((((.((((((((.((((((((......))).))))).)))))))).))))....)))))))).)))))))))))

Structure

c    gugu       caacgg        ---U    A        a     -   cc 
 gucc    ucgugcu      GUAAGUGG    GUAG UGAAACAa uuaac caa  u
 ||||    |||||||      ||||||||    |||| |||||||| ||||| |||   
 uagg    agcaugG      CGUUUACC    UAUC ACUUUguu gguug guu  u
-    ----       -----A        UUGC    C        a     u   au 

Annotation confidence High

Genome context

ref|NC_046679.1|: 12623757-12623862 [+]

Mature dps-miR-1010-5p

• Accession: MIMAT0012273
• Description: Drosophila pseudoobscura dps-miR-1010-5p mature miRNA
• Sequence: 23 - GUAAGUGGUGUAGAUGAAACA - 43
• Evidence: experimental ; Illumina [1]

Mature dps-miR-1010-3p

• Accession: MIMAT0012274
• Description: Drosophila pseudoobscura dps-miR-1010-3p mature miRNA
• Sequence: 73 - UUUCACCUAUCGUUCCAUUUGCAG - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9