miRBase entry: dps-mir-307b

Stem-loop dps-mir-307b


Accession
MI0011623
Description
Drosophila pseudoobscura dps-mir-307b precursor miRNA


Sequence

74248 reads, 556.0 reads per million, 19 experiments
uccugcuaucGCUCACUCAAGGAGGUUGUGAuggauaccauaucgaaauaacaUCACACCCAGGUUGAGUGAGUCaaagcaagac
((.((((...((((((((((...((.(((((((..................))))))).))...))))))))))...)))).)).

Structure
-  c    auc          GGA  U       gauaccau 
 uc ugcu   GCUCACUCAA   GG UGUGAug        a
 || ||||   ||||||||||   || |||||||         
 ag acga   UGAGUGAGUU   CC ACACUac        u
c  a    aaC          GGA  C       aauaaagc 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
ref|NC_046680.1|: 17894001-17894085 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dps-mir-307b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-307b-5p

Accession MIMAT0053419
Description Drosophila pseudoobscura dps-miR-307b-5p mature miRNA
Sequence 11 - GCUCACUCAAGGAGGUUGUGA - 31
Evidence experimental
Illumina [1]

Mature dps-miR-307b-3p

Accession MIMAT0012281
Description Drosophila pseudoobscura dps-miR-307b-3p mature miRNA
Sequence 54 - UCACACCCAGGUUGAGUGAGUC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9