Stem-loop dps-mir-iab-8

Accession

MI0011626

Description

Drosophila pseudoobscura dps-mir-iab-8 precursor miRNA

Sequence

1685 reads, 12.0 reads per million, 19 experiments

ugcugguguuuccucgugUUACGUAUACUGAAGGUAUACcggauaggauacacuCAGGAUACAUUCAGUAUACGUauacgaagucgcacaggu
.(((.((((..(.((((((.((((((((((((.((((.((.((..(....)..)).)))))).)))))))))))))))))).)..)))).)))

Structure

u   g    uu c      U            G    A  g  ua g 
 gcu gugu  c ucgugU ACGUAUACUGAA GUAU Cc ga  g a
 ||| ||||  | |||||| |||||||||||| |||| || ||  |  
 ugg cacg  g agcaua UGCAUAUGACUU CAUA GG Cu  c u
-   a    cu a      -            A    -  A  ca a 

Annotation confidence Medium

Genome context

ref|NC_046679.1|: 18022043-18022135 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-iab-8

Mature dps-miR-iab-8-5p

• Accession: MIMAT0012284
• Description: Drosophila pseudoobscura dps-miR-iab-8-5p mature miRNA
• Sequence: 19 - UUACGUAUACUGAAGGUAUAC - 39
• Evidence: experimental ; Illumina [1]

Mature dps-miR-iab-8-3p

• Accession: MIMAT0012285
• Description: Drosophila pseudoobscura dps-miR-iab-8-3p mature miRNA
• Sequence: 55 - CAGGAUACAUUCAGUAUACGU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9