miRBase entry: dps-mir-2506

Stem-loop dps-mir-2506

Accession

MI0011631

Description

Drosophila pseudoobscura dps-mir-2506 precursor miRNA

Sequence

cugcccaucuauuuucuggacggaguuugcacaauacguauuuauauacauacauacauauguauauauguaauuuguuaacAUAUUGGCAGUCUUCGGCCUGAaaauguuuguaca
.....((..(((((((.((.(((((.((((.(((((.((.......((((((.((((....)))).))))))........)).))))))))).))))).)).)))))))..))....

Structure

cugcc  uc       u  a     u    a     c  -auuuaua      c    a 
     ca  uauuuuc gg cggag uugc caaua gu        uacaua auac u
     ||  ||||||| || ||||| |||| ||||| ||        |||||| ||||  
     gu  guaaaAG CC GCUUC GACG GUUAU ca        auguau uaug a
-acau  uu       U  G     U    -     A  auuguuua      a    u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

3: 8680187-8680303 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from dps-mir-2506

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2506

Accession	MIMAT0012290
Description	Drosophila pseudoobscura dps-miR-2506 mature miRNA
Sequence	83 - AUAUUGGCAGUCUUCGGCCUGA - 104
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9