miRBase entry: dps-mir-2507a

Stem-loop dps-mir-2507a


Accession
MI0011632
Description
Drosophila pseudoobscura dps-mir-2507a precursor miRNA


Sequence

4490 reads, 30.0 reads per million, 19 experiments
auuuauaacgacaacaaauuagugggcaugaauuugugccaauauuuuauuuuuuaauuaaUGUUGUACAUUUUCGUGCCUAUAAauuucaaugucucgucuauagau
(((((((((((..(((((((.(((((((((((..(((((.((((((..(((....))).)))))))))))..))))))))))).))))....))).)))).)))))))

Structure
       -    ca   ----    a           uu     c      uu   u 
auuuaua acga  aca    aauu gugggcaugaa  ugugc aauauu  auu u
||||||| ||||  |||    |||| |||||||||||  ||||| ||||||  |||  
uagauau ugcu  ugu    uuaA UAUCCGUGCUU  ACAUG UUGUaa  uaa u
       c    -c   aacu    A           UU     -      -u   u 


Annotation confidence Not enough data
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Genome context
ref|NC_046680.1|: 12416262-12416369 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from dps-mir-2507a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2507a-3p

Accession MIMAT0012291
Description Drosophila pseudoobscura dps-miR-2507a-3p mature miRNA
Sequence 62 - UGUUGUACAUUUUCGUGCCUAUAA - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9