Stem-loop dps-mir-2508

Accession

MI0011633

Description

Drosophila pseudoobscura dps-mir-2508 precursor miRNA

Sequence

312 reads, 3.0 reads per million, 19 experiments

uaccuaaauccgcggggccAUCUGCUUAUUAGGGGUCUGcucgggauuaucaaauugguaggUAGAUCUCUAAUAAGCAAAGGUcccgcggauuuacccaaucggua
(((((((((((((((((((...(((((((((((((((((((...((((....))))....)))))))))))))))))))..))))))))))))))).......))))

Structure

    -------               AUC                   -cgg    a 
uacc       uaaauccgcggggcc   UGCUUAUUAGGGGUCUGcu    gauu u
||||       |||||||||||||||   |||||||||||||||||||    ||||  
augg       auuuaggcgcccUGG   ACGAAUAAUCUCUAGAUgg    uuaa c
    cuaaccc               -AA                   augg    a 

Annotation confidence High

Genome context

ref|NC_046681.1|: 22132547-22132653 [-]

Mature dps-miR-2508-5p

• Accession: MIMAT0053425
• Description: Drosophila pseudoobscura dps-miR-2508-5p mature miRNA
• Sequence: 20 - AUCUGCUUAUUAGGGGUCUG - 39
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2508-3p

• Accession: MIMAT0012292
• Description: Drosophila pseudoobscura dps-miR-2508-3p mature miRNA
• Sequence: 63 - UAGAUCUCUAAUAAGCAAAGGU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9