Stem-loop dps-mir-2511-1

Accession

MI0011637

Description

Drosophila pseudoobscura dps-mir-2511-1 precursor miRNA

Sequence

11569 reads, 92.0 reads per million, 20 experiments

gaaaguguuucccccaccaaaugcacauucgugcuaUAUGGCACACAGUUGAUUUAUAuuauuuucuaguucaUAAGUCUGUUGAGUGCCAUAGAgcaagaagugugaugcauccuc
....((((.((...........((((.(((.((((.((((((((.(((..(((((((((((.....))))..)))))))..))).)))))))).)))).))))))))).))))....

Structure

gaaa    u  ccccaccaaau    a   g    a        A   UU       --    u 
    gugu uc           gcac uuc ugcu UAUGGCAC CAG  GAUUUAU  Auua u
    |||| ||           |||| ||| |||| |||||||| |||  |||||||  |||| u
    uacg ag           ugug aag acgA AUACCGUG GUU  CUGAAUa  ugau u
cucc    u  -----------    -   a    G        A   GU       cu    c 

Annotation confidence High

Genome context

ref|NC_046681.1|: 5945630-5945746 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dps-mir-2511-1

Mature dps-miR-2511-5p

• Accession: MIMAT0053428
• Description: Drosophila pseudoobscura dps-miR-2511-5p mature miRNA
• Sequence: 37 - UAUGGCACACAGUUGAUUUAUA - 58
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2511-3p

• Accession: MIMAT0012296
• Description: Drosophila pseudoobscura dps-miR-2511-3p mature miRNA
• Sequence: 74 - UAAGUCUGUUGAGUGCCAUAGA - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9