miRBase entry: dps-mir-2511-1

Stem-loop dps-mir-2511-1

Accession

MI0011637

Description

Drosophila pseudoobscura dps-mir-2511-1 precursor miRNA

Sequence

gaaaguguuucccccaccaaaugcacauucgugcuauauggcacacaguugauuuauauuauuuucuaguucaUAAGUCUGUUGAGUGCCAUAGAgcaagaagugugaugcauccuc
....((((.((...........((((.(((.((((.((((((((.(((..(((((((((((.....))))..)))))))..))).)))))))).)))).))))))))).))))....

Structure

gaaa    u  ccccaccaaau    a   g    a        a   uu       --    u 
    gugu uc           gcac uuc ugcu uauggcac cag  gauuuau  auua u
    |||| ||           |||| ||| |||| |||||||| |||  |||||||  |||| u
    uacg ag           ugug aag acgA AUACCGUG GUU  CUGAAUa  ugau u
cucc    u  -----------    -   a    G        A   GU       cu    c

Annotation confidence Not enough data

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Genome context

4_group4: 3552536-3552652 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from dps-mir-2511-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2511

Accession	MIMAT0012296
Description	Drosophila pseudoobscura dps-miR-2511 mature miRNA
Sequence	74 - UAAGUCUGUUGAGUGCCAUAGA - 95
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9