miRBase entry: dps-mir-2511-2

Stem-loop dps-mir-2511-2


Accession
MI0011638
Description
Drosophila pseudoobscura dps-mir-2511-2 precursor miRNA


Sequence

11567 reads, 92.0 reads per million, 20 experiments
ucacauucgugcuaUAUGGCACACAGUUGAUUUAUAuuauuuucuaguucaUAAGUCUGUUGAGUGCCAUAGAgcaagaagugugau
((((((((.((((.((((((((.(((..(((((((((((.....))))..)))))))..))).)))))))).)))).).))))))).

Structure
-       - g    a        A   UU       --    u 
 ucacauu c ugcu UAUGGCAC CAG  GAUUUAU  Auua u
 ||||||| | |||| |||||||| |||  |||||||  |||| u
 aguguga g acgA AUACCGUG GUU  CUGAAUa  ugau u
u       a a    G        A   GU       cu    c 


Annotation confidence High
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Genome context
ref|NC_046681.1|: 5940954-5941040 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dps-mir-2511-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2511-5p

Accession MIMAT0053428
Description Drosophila pseudoobscura dps-miR-2511-5p mature miRNA
Sequence 15 - UAUGGCACACAGUUGAUUUAUA - 36
Evidence experimental
Illumina [1]

Mature dps-miR-2511-3p

Accession MIMAT0012296
Description Drosophila pseudoobscura dps-miR-2511-3p mature miRNA
Sequence 52 - UAAGUCUGUUGAGUGCCAUAGA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9