Stem-loop dps-mir-2519

Accession

MI0011652

Description

Drosophila pseudoobscura dps-mir-2519 precursor miRNA

Sequence

5089 reads, 40.0 reads per million, 21 experiments

gugccuggcggccggauugaauaacGUAUGUGGAAUUGAAGUUGAUAUacauuccaugaacauuugagggacAUCAAUUUCUUUUUCAAUUACAGuucuucuuguucccggcccugca
.(((..((.((((((...(((.((((((..(((((..(((((((((.....((((.(((....))).)))).)))))))))..)))))..))).))).)))......)))))))))))

Structure

g   cu  c      ---auu   u   -   UG     UU         AUaca    a   a 
 ugc  gg ggccgg      gaa aac GUA  UGGAA  GAAGUUGAU     uucc uga c
 |||  || ||||||      ||| ||| |||  |||||  |||||||||     |||| |||  
 acg  uc ccggcc      cuu uuG CAU  ACUUU  CUUUAACUA     aggg guu a
-   --  -      cuuguu   c   A   UA     UU         ----c    a   u 

Annotation confidence High

Genome context

ref|NC_046683.1|: 9732724-9732841 [+]

Mature dps-miR-2519-5p

• Accession: MIMAT0012307
• Description: Drosophila pseudoobscura dps-miR-2519-5p mature miRNA
• Sequence: 26 - GUAUGUGGAAUUGAAGUUGAUAU - 48
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2519-3p

• Accession: MIMAT0053433
• Description: Drosophila pseudoobscura dps-miR-2519-3p mature miRNA
• Sequence: 73 - AUCAAUUUCUUUUUCAAUUACAG - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9