miRBase entry: dps-mir-2524

Stem-loop dps-mir-2524


Accession
MI0011657
Description
Drosophila pseudoobscura dps-mir-2524 precursor miRNA


Sequence

134195 reads, 1035.0 reads per million, 21 experiments
gaguuauauaguuuguaguugGCCCGGUUCCCAGCACAUGUAUGuugaauuaaauaucaUAUUGUACUGCGACUCGGGCCAauuauuagcuca
((((((........(((((((((((((.((.(((.(((((((((((......))))).))).))).))).)).))))))))))))))))))).

Structure
-      uauaguuu             U  C   C   -   -     ga 
 gaguua        guaguugGCCCGG UC CAG ACA UGU AUGuu  a
 ||||||        ||||||||||||| || ||| ||| ||| |||||   
 cucgau        uauuaACCGGGCU AG GUC UGU AUa uauaa  u
a      --------             C  C   A   U   c     au 


Annotation confidence High
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Genome context
ref|NC_046683.1|: 9692735-9692827 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from dps-mir-2524
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2524-5p

Accession MIMAT0053437
Description Drosophila pseudoobscura dps-miR-2524-5p mature miRNA
Sequence 22 - GCCCGGUUCCCAGCACAUGUAUG - 44
Evidence experimental
Illumina [1]

Mature dps-miR-2524-3p

Accession MIMAT0012312
Description Drosophila pseudoobscura dps-miR-2524-3p mature miRNA
Sequence 60 - UAUUGUACUGCGACUCGGGCCA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9