miRBase entry: dps-mir-2530

Stem-loop dps-mir-2530


Accession
MI0011664
Description
Drosophila pseudoobscura dps-mir-2530 precursor miRNA


Sequence

740 reads, 62.0 reads per million, 21 experiments
gacuaagcucauaaUAUUUCUGGAAGUUACAGUGGGCauauccaagccgcuaaauaUGUGAGCUGUUAACGCCUUAAAGCCuuuugagucaagu
.(((..(((((.....(((..((..((((((((..((((((............))))))..)))).)))).))..)))......)))))..)))

Structure
g   aa     -uaaUA   CU  AA    -    GG      ccaag 
 acu  gcuca      UUU  GG  GUUA CAGU  GCauau     c
 |||  |||||      |||  ||  |||| ||||  ||||||      
 uga  ugagu      AAA  CC  CAAU GUCG  UGUaua     c
-   ac     uuuCCG   UU  -G    U    AG      aaucg 


Annotation confidence Medium
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Genome context
ref|NC_046683.1|: 20237517-20237610 [-]

Database links

Mature dps-miR-2530-5p

Accession MIMAT0012319
Description Drosophila pseudoobscura dps-miR-2530-5p mature miRNA
Sequence 15 - UAUUUCUGGAAGUUACAGUGGGC - 37
Evidence experimental
Illumina [1]

Mature dps-miR-2530-3p

Accession MIMAT0053444
Description Drosophila pseudoobscura dps-miR-2530-3p mature miRNA
Sequence 57 - UGUGAGCUGUUAACGCCUUAAAGCC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9