Stem-loop dps-mir-2531

Accession

MI0011665

Description

Drosophila pseudoobscura dps-mir-2531 precursor miRNA

Sequence

5445 reads, 45.0 reads per million, 19 experiments

uccUGGUUUCCACGGCCUUCGUAACGGggccuggccgguggcgugaucccaugcccuuauuuggucaugcgucggaUCACUGCCGGCCCGAUCCCGCCGUcucgccgucuaguga
((((((.....(((((...((...(((((.(.(((((((...(((((((.((((((......))....)))).))))))).))))))).).))))).))....))))))))).))

Structure

  -    UUUCC     -CUU  UAA     c u       ggc       c    ----  uu 
uc cUGG     ACGGC    CG   CGGgg c ggccggu   gugaucc augc    cc  a
|| ||||     |||||    ||   ||||| | |||||||   ||||||| ||||    ||   
ag gauc     ugccg    GC   GCCCU G CCGGCCG   CACUagg ugcg    gg  u
  u    -----     cucU  --C     A C       --U       c    uacu  uu 

Annotation confidence Medium

Genome context

ref|NC_046682.1|: 327041-327155 [+]

Mature dps-miR-2531-5p

• Accession: MIMAT0053445
• Description: Drosophila pseudoobscura dps-miR-2531-5p mature miRNA
• Sequence: 4 - UGGUUUCCACGGCCUUCGUAACGG - 27
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2531-3p

• Accession: MIMAT0012320
• Description: Drosophila pseudoobscura dps-miR-2531-3p mature miRNA
• Sequence: 77 - UCACUGCCGGCCCGAUCCCGCCGU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9