Stem-loop dps-mir-2534

Accession

MI0011668

Description

Drosophila pseudoobscura dps-mir-2534 precursor miRNA

Sequence

5624 reads, 62.0 reads per million, 19 experiments

gccggccacuccucccgcgggaucgccUUCCAGUGGCCCGUGGCUGccggugcugagcucugccgcugcagggccgGCCGCUUGGGUCUUGCCUGGGGcuccgggcaggaggccugc
((.((((..((((((((.(((.((.((...(((.((((((.(((.((((((.((((((......))).))).)))))).))))))))))))...))))))))))).)))))))).))

Structure

  c    ac    -    c   a  g  UUC   U      U   U      g   -   uc 
gc ggcc  uccu cccg ggg uc cc   CAG GGCCCG GGC Gccggu cug agc  u
|| ||||  |||| |||| ||| || ||   ||| |||||| ||| |||||| ||| |||   
cg ccgg  agga gggc cuc GG GG   GUU CUGGGU UCG CGgccg gac ucg  g
  u    --    c    -   -  -  UCC   -      -   C      g   g   cc 

Annotation confidence Medium

Genome context

ref|NW_022881707.1|: 140897-141013 [+]

Mature dps-miR-2534-5p

• Accession: MIMAT0053448
• Description: Drosophila pseudoobscura dps-miR-2534-5p mature miRNA
• Sequence: 28 - UUCCAGUGGCCCGUGGCUG - 46
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2534-3p

• Accession: MIMAT0012323
• Description: Drosophila pseudoobscura dps-miR-2534-3p mature miRNA
• Sequence: 77 - GCCGCUUGGGUCUUGCCUGGGG - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9