Stem-loop dps-mir-2536

Accession

MI0011670

Description

Drosophila pseudoobscura dps-mir-2536 precursor miRNA

Sequence

gugauuucuagagaagaacuggcagugcAAUACGUUUUUCUUCGCACUGAuguguguuuaaaccucAAUGCGUUGAAUAACGUUUUACagugugcguuucugagcaucgcc
((((((((.(((....(((..(((.((.((.(((((.(((..((((.(((.((........)).))).))))..))).))))).)).)).)))..))))))))).))))).

Structure

-     -   u   gaag   ug   g  c  U     U   UU    C   u  gug 
 gugau uuc aga    aac  gca ug AA ACGUU UUC  CGCA UGA gu   u
 ||||| ||| |||    |||  ||| || || ||||| |||  |||| ||| ||    
 cgcua gag ucu    uug  ugu aC UU UGCAA AAG  GCGU Acu ca   u
c     c   -   ----   cg   g  A  U     U   UU    A   c  aau 

Annotation confidence Not enough data

Genome context

XL_group1e: 8362342-8362452 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from dps-mir-2536

Mature dps-miR-2536-5p

• Accession: MIMAT0012326
• Description: Drosophila pseudoobscura dps-miR-2536-5p mature miRNA
• Sequence: 29 - AAUACGUUUUUCUUCGCACUGA - 50
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2536-3p

• Accession: MIMAT0012327
• Description: Drosophila pseudoobscura dps-miR-2536-3p mature miRNA
• Sequence: 67 - AAUGCGUUGAAUAACGUUUUAC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9