Stem-loop dps-mir-2541

Accession

MI0011676

Description

Drosophila pseudoobscura dps-mir-2541 precursor miRNA

Sequence

2118 reads, 14.0 reads per million, 18 experiments

cgaggaucgcugggacagguacuuuUAUCGAAUGUUCCAGACUUUUAGugcuaucauugcuUGAAGCUCGGACAUUUGGUAAGaauauguuccuccaagagccccuga
..(((...(((((((((.....(((((((((((((((.((.((((....((.......))..)))))).)))))))))))))))...))))))......))).)))..

Structure

cg   auc   ------      gguac               C  A    UAGu  ua 
  agg   gcu      gggaca     uuuUAUCGAAUGUUC AG CUUU    gc  u
  |||   |||      ||||||     ||||||||||||||| || ||||    ||  c
  ucc   cga      ccuugu     aGAAUGGUUUACAGG UC GAAG    cg  a
ag   --c   gaaccu      --aua               C  -    --Uu  uu 

Annotation confidence High

Genome context

ref|NC_046683.1|: 9706086-9706193 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from dps-mir-2541

Mature dps-miR-2541-5p

• Accession: MIMAT0012338
• Description: Drosophila pseudoobscura dps-miR-2541-5p mature miRNA
• Sequence: 26 - UAUCGAAUGUUCCAGACUUUUAG - 48
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2541-3p

• Accession: MIMAT0012339
• Description: Drosophila pseudoobscura dps-miR-2541-3p mature miRNA
• Sequence: 62 - UGAAGCUCGGACAUUUGGUAAG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9