Stem-loop dps-mir-2542-1

Accession

MI0011677

Description

Drosophila pseudoobscura dps-mir-2542-1 precursor miRNA

Sequence

gggcuuauauuugUAUUUUUGCUCGGACAUUUAUGUacaauuugagcgucaUAGAUGGUUGCAGCAUAAAUAGAauuauuagccc
(((((.(((.((.(((((.((((((..((((((((.((.........))))))))))..)).)))).))))).)).))).)))))

Structure

     u   u  g     U    -  GA        U  aau 
gggcu aua uu UAUUU UGCU CG  CAUUUAUG ac   u
||||| ||| || ||||| |||| ||  |||||||| ||   u
cccga uau aA AUAAA ACGA GU  GUAGAUac ug   g
     u   u  G     U    C  UG        -  cga 

Annotation confidence Not enough data

Genome context

XL_group1e: 8373614-8373698 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from dps-mir-2542-1

Mature dps-miR-2542-5p

• Accession: MIMAT0012340
• Description: Drosophila pseudoobscura dps-miR-2542-5p mature miRNA
• Sequence: 14 - UAUUUUUGCUCGGACAUUUAUGU - 36
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2542-3p

• Accession: MIMAT0012341
• Description: Drosophila pseudoobscura dps-miR-2542-3p mature miRNA
• Sequence: 52 - UAGAUGGUUGCAGCAUAAAUAGA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9