Stem-loop dps-mir-2517-1

Accession

MI0011678

Description

Drosophila pseudoobscura dps-mir-2517-1 precursor miRNA

Sequence

ccgggucaaaugguccagaguuUUCAGAUCCUCAAAUACCAUAUGuauuauuugacuuucaUAUUGAUUUGGUGGAUUUGAAAAcuuuucacuuaagaacacuug
.(((((.....(((..(((((((((((((((((((((.(.(((((..............))))).))))))).)))))))))))))))..))).......)))))

Structure

c     --caaau   cc               -      A C     uauuau 
 cgggu       ggu  agaguuUUCAGAUCC UCAAAU C AUAUG      u
 |||||       |||  ||||||||||||||| |||||| | |||||       
 guuca       uca  uuucAAAAGUUUAGG GGUUUA G UAUac      u
-     caagaau   cu               U      - U     uuucag 

Annotation confidence Not enough data

Genome context

Unknown_singleton_1920: 1593-1697 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dps-mir-2517-1

Mature dps-miR-2517-3p

• Accession: MIMAT0012343
• Description: Drosophila pseudoobscura dps-miR-2517-3p mature miRNA
• Sequence: 62 - UAUUGAUUUGGUGGAUUUGAAAA - 84
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2517a*

• Accession: MIMAT0012342
• Description: Drosophila pseudoobscura dps-miR-2517a* mature miRNA
• Sequence: 23 - UUCAGAUCCUCAAAUACCAUAUG - 45

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9