miRBase entry: dps-mir-2542-3

Stem-loop dps-mir-2542-3

Accession

MI0011683

Description

Drosophila pseudoobscura dps-mir-2542-3 precursor miRNA

Sequence

gggcuuauauuugUAUUUUUGCUCGGACAUUUAUGUacaauuugaacgucaUAGAUGGUUGCAGCAUAAAUAGAauuauuagccc
(((((.(((.((.(((((.((((((..((((((((.((.........))))))))))..)).)))).))))).)).))).)))))

Structure

     u   u  g     U    -  GA        U  aau 
gggcu aua uu UAUUU UGCU CG  CAUUUAUG ac   u
||||| ||| || ||||| |||| ||  |||||||| ||   u
cccga uau aA AUAAA ACGA GU  GUAGAUac ug   g
     u   u  G     U    C  UG        -  caa

Annotation confidence Not enough data

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Genome context

XL_group1e: 8378579-8378663 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from dps-mir-2542-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2542-5p

Accession	MIMAT0012340
Description	Drosophila pseudoobscura dps-miR-2542-5p mature miRNA
Sequence	14 - UAUUUUUGCUCGGACAUUUAUGU - 36
Evidence	experimental Illumina [1]

Mature dps-miR-2542-3p

Accession	MIMAT0012341
Description	Drosophila pseudoobscura dps-miR-2542-3p mature miRNA
Sequence	52 - UAGAUGGUUGCAGCAUAAAUAGA - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9