Stem-loop dps-mir-2544

Accession

MI0011684

Description

Drosophila pseudoobscura dps-mir-2544 precursor miRNA

Sequence

auuggucuauacaaauggucuauagcuuUCCUGGCUCUCGGCUCUAUAUGcuuuguuuauuuauacuaUAUAGAACUGAGCAACAGGUAAauuauuuaccaccaa
.(((((..........(((..((((.(((((((...(((((.((((((((...(((......))).)))))))).)))))...)))).)))))))..))))))))

Structure

a     cuauacaaau   cu    c   -    GCU     C        cuu   uu 
 uuggu          ggu  auag uuU CCUG   CUCGG UCUAUAUG   ugu  a
 |||||          |||  |||| ||| ||||   ||||| ||||||||   |||   
 aacca          cca  uauu aAA GGAC   GAGUC AGAUAUau   aua  u
-     ----------   uu    -   U    AAC     A        --c   uu 

Annotation confidence Not enough data

Genome context

XL_group1e: 8378925-8379029 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from dps-mir-2544

Mature dps-miR-2544-5p

• Accession: MIMAT0012348
• Description: Drosophila pseudoobscura dps-miR-2544-5p mature miRNA
• Sequence: 29 - UCCUGGCUCUCGGCUCUAUAUG - 50
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2544-3p

• Accession: MIMAT0012349
• Description: Drosophila pseudoobscura dps-miR-2544-3p mature miRNA
• Sequence: 69 - UAUAGAACUGAGCAACAGGUAA - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9