miRBase entry: dps-mir-2553

Stem-loop dps-mir-2553

Accession

MI0011695

Description

Drosophila pseudoobscura dps-mir-2553 precursor miRNA

Sequence

uuuguacaccaacauuugUGCGUCUAAGAUCUGUGCAGUAUauacauacauagaauacaaaaUAUUGCAGACUUCUCAGACUACAaaugugaacugucuggucuucaaa
.(((...(((((((((((((.((((.(((..(.((((((((....................)))))))).)..))).)))))))))))))........))))...))).

Structure

u   uac    --------         C    A   UC G        auacauaca 
 uug   acca        acauuugUG GUCU AGA  U UGCAGUAU         u
 |||   ||||        ||||||||| |||| |||  | ||||||||          
 aac   uggu        uguaaACAU CAGA UCU  A ACGUUAUa         a
a   uuc    cugucaag         -    C   UC G        aaacauaag

Annotation confidence Not enough data

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Genome context

3: 8680021-8680129 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from dps-mir-2553

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2553-5p

Accession	MIMAT0012366
Description	Drosophila pseudoobscura dps-miR-2553-5p mature miRNA
Sequence	19 - UGCGUCUAAGAUCUGUGCAGUAU - 41
Evidence	experimental Illumina [1]

Mature dps-miR-2553-3p

Accession	MIMAT0012367
Description	Drosophila pseudoobscura dps-miR-2553-3p mature miRNA
Sequence	63 - UAUUGCAGACUUCUCAGACUACA - 85
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9