miRBase entry: dps-mir-2554

Stem-loop dps-mir-2554

Accession

MI0011696

Description

Drosophila pseudoobscura dps-mir-2554 precursor miRNA

Sequence

cugagaucaucaacuaaaauucauccuuuauuauuugUAGGCCAGUGAUUUCACAGUACGuuuguuuucuucuacaUAUUGUCAGAUCUCUGUCCUCAaaauauucaaggcuuucag
((((((..................((((...(((((..(((.(((.(((((.((((((.((............)).)))))).))))).))).)))..)))))...)))).))))))

Structure

      ucaucaacuaaaauucau    uau     gU   C   U     C      C  uuguu 
cugaga                  ccuu   uauuu  AGG CAG GAUUU ACAGUA Gu     u
||||||                  ||||   |||||  ||| ||| ||||| |||||| ||      
gacuuu                  ggaa   auaaa  UCC GUC CUAGA UGUUAU ca     u
      -----------------c    cuu     AC   U   U     C      a  ucuuc

Annotation confidence Not enough data

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Genome context

3: 8680335-8680451 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from dps-mir-2554

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2554-5p

Accession	MIMAT0012368
Description	Drosophila pseudoobscura dps-miR-2554-5p mature miRNA
Sequence	38 - UAGGCCAGUGAUUUCACAGUACG - 60
Evidence	experimental Illumina [1]

Mature dps-miR-2554-3p

Accession	MIMAT0012369
Description	Drosophila pseudoobscura dps-miR-2554-3p mature miRNA
Sequence	77 - UAUUGUCAGAUCUCUGUCCUCA - 98
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9