miRBase entry: dps-mir-2507b

Stem-loop dps-mir-2507b

Accession

MI0011697

Description

Drosophila pseudoobscura dps-mir-2507b precursor miRNA

Sequence

agugcugugauaagcugacaaacauuuaUAGGCAAAAAUCAGUUUCAAUAUuucucuuuaauuaaUAUUGCACUUUUUCUUGCCUCUaaauuugauugccucgucuaaaaauagcac
.(((((((....((.((((((.((((((.((((((.((..(((..(((((((...........))))))).)))..)).)))))).))))..)).)))..))).))....)))))))

Structure

a       gaua  c   --   a  --    U      A  UC   UU       ucuc 
 gugcugu    ag uga  caa ca  uuua AGGCAA AA  AGU  CAAUAUu    u
 |||||||    || |||  ||| ||  |||| |||||| ||  |||  |||||||    u
 cacgaua    uc gcu  guu gu  aaaU UCCGUU UU  UCA  GUUAUaa    u
-       aaaa  u   cc   a  uu    C      C  UU   -C       uuaa

Annotation confidence Not enough data

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Genome context

3: 8680663-8680779 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from dps-mir-2507b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dps-miR-2507b-5p

Accession	MIMAT0012370
Description	Drosophila pseudoobscura dps-miR-2507b-5p mature miRNA
Sequence	29 - UAGGCAAAAAUCAGUUUCAAUAU - 51
Evidence	experimental Illumina [1]

Mature dps-miR-2507b-3p

Accession	MIMAT0012371
Description	Drosophila pseudoobscura dps-miR-2507b-3p mature miRNA
Sequence	66 - UAUUGCACUUUUUCUUGCCUCU - 87
Evidence	experimental Illumina [1]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9