Stem-loop dps-mir-2557

Accession

MI0011700

Description

Drosophila pseudoobscura dps-mir-2557 precursor miRNA

Sequence

6130 reads, 65.0 reads per million, 22 experiments

ggugacccgcuuucacacagGUAUGCUGUAGCAAGGAUCACUUugagggcagucccacuUCAGAUCCUUUUUCCGGCAUUAGguuugguccu
((.((((.((((..........((((((.((.(((((((....(((((.........)))))))))))).)).)))))).))))..))))))

Structure

  u    -c    ucacacagGU      U  C       ACUU     gca 
gg gacc  gcuu          AUGCUG AG AAGGAUC    ugagg   g
|| ||||  ||||          |||||| || |||||||    |||||   u
uc cugg  ugGA          UACGGC UU UUCCUAG    ACUuc   c
  -    uu    ---------U      C  U       ----     acc 

Annotation confidence High

Genome context

ref|NC_046679.1|: 839581-839672 [+]

Mature dps-miR-2557-5p

• Accession: MIMAT0012376
• Description: Drosophila pseudoobscura dps-miR-2557-5p mature miRNA
• Sequence: 21 - GUAUGCUGUAGCAAGGAUCACUU - 43
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2557-3p

• Accession: MIMAT0012377
• Description: Drosophila pseudoobscura dps-miR-2557-3p mature miRNA
• Sequence: 60 - UCAGAUCCUUUUUCCGGCAUUAG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9