miRBase entry: dps-mir-2564

Stem-loop dps-mir-2564


Accession
MI0011708
Description
Drosophila pseudoobscura dps-mir-2564 precursor miRNA


Sequence

1310 reads, 9.0 reads per million, 19 experiments
gaaguuuauaaaaccagaaacaaauuuuguGUAAAUGUGAUAAUUGUUUGUaaguuugcccuuaUAAUCAAUCUUAUUACGUUUAUaguauaaugagcuggucuagcuc
............(((((............(((((((((((((((((.(((((((......))))))).))))..)))))))))))))..........))))).......

Structure
gaaguuuauaaa     aaacaaauuuug             --    U       uu 
            accag            uGUAAAUGUGAUA  AUUG UUGUaag  u
            |||||            |||||||||||||  |||| |||||||   
            ugguc            aUAUUUGCAUUAU  UAAC AAUauuc  g
-----cucgauc     --gaguaauaug             UC    U       cc 


Annotation confidence High
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Genome context
ref|NC_046681.1|: 7880251-7880359 [-]

Database links

Mature dps-miR-2564-5p

Accession MIMAT0012390
Description Drosophila pseudoobscura dps-miR-2564-5p mature miRNA
Sequence 31 - GUAAAUGUGAUAAUUGUUUGU - 51
Evidence experimental
Illumina [1]

Mature dps-miR-2564-3p

Accession MIMAT0012391
Description Drosophila pseudoobscura dps-miR-2564-3p mature miRNA
Sequence 65 - UAAUCAAUCUUAUUACGUUUAU - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9