miRBase entry: dps-mir-2567a

Stem-loop dps-mir-2567a


Accession
MI0011711
Description
Drosophila pseudoobscura dps-mir-2567a precursor miRNA


Sequence

60206 reads, 433.0 reads per million, 19 experiments
uuuucaguuuuuuACCAGGUUAGAUUUGCGAAACGuugaauuuaggucgUAUCACAAUUCUAGCCUGGCAauuuugcuugaaaaa
((((((((...((.((((((((((.(((.((.(((............))).)).))).)))))))))).))....)).)))))).

Structure
-      -  -uuu  A          U   C  A   uugaa 
 uuuuca gu    uu CCAGGUUAGA UUG GA ACG     u
 |||||| ||    || |||||||||| ||| || |||      
 aaaagu cg    aA GGUCCGAUCU AAC CU Ugc     u
a      u  uuuu  C          U   A  A   uggau 


Annotation confidence High
Do you think this miRNA is real?

Genome context
ref|NC_046681.1|: 5943738-5943822 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dps-mir-2567a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2567a-5p

Accession MIMAT0012396
Description Drosophila pseudoobscura dps-miR-2567a-5p mature miRNA
Sequence 14 - ACCAGGUUAGAUUUGCGAAACG - 35
Evidence experimental
Illumina [1]

Mature dps-miR-2567a-3p

Accession MIMAT0012397
Description Drosophila pseudoobscura dps-miR-2567a-3p mature miRNA
Sequence 50 - UAUCACAAUUCUAGCCUGGCA - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9