miRBase entry: dps-mir-2566b

Stem-loop dps-mir-2566b


Accession
MI0011714
Description
Drosophila pseudoobscura dps-mir-2566b precursor miRNA


Sequence

1455 reads, 11.0 reads per million, 18 experiments
auuugcauuuggcUUUAGAAACACAAAGCAUGUGUGguauuucaacucaUACAUAUCUUGUGUUUCUAGAUcaaaugugagua
((((((((((((.(((((((((((((...(((((((((......)).)))))))...))))))))))))))))))))))))).

Structure
-            c             AGC       -  au 
 auuugcauuugg UUUAGAAACACAA   AUGUGUG gu  u
 |||||||||||| |||||||||||||   ||||||| ||   
 ugaguguaaacU AGAUCUUUGUGUU   UACAUac ca  u
a            -             CUA       u  ac 


Annotation confidence High
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Genome context
ref|NC_046681.1|: 5941196-5941278 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dps-mir-2566b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2566b-5p

Accession MIMAT0012400
Description Drosophila pseudoobscura dps-miR-2566b-5p mature miRNA
Sequence 14 - UUUAGAAACACAAAGCAUGUGUG - 36
Evidence experimental
Illumina [1]

Mature dps-miR-2566b-3p

Accession MIMAT0012401
Description Drosophila pseudoobscura dps-miR-2566b-3p mature miRNA
Sequence 50 - UACAUAUCUUGUGUUUCUAGAU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9