Stem-loop dps-mir-2576-1

Accession

MI0011727

Description

Drosophila pseudoobscura dps-mir-2576-1 precursor miRNA

Sequence

4381 reads, 55.0 reads per million, 19 experiments

cggcgaucgggucuCUCGAGUGUGGAGAGCAUGGGAGUuggcggacacaugagaguuccaccaugaaccucguccagcccacUCUCAUCUCAUCCGCCCGCUCGAGaggucgcgaucguc
.((((((((.(((((((((((((((((((.((((((((.(((((((....(((.((((......))))))))))).))).))))))))))).)))))..)))))))))).).))))))))

Structure

c        g -          --     -   C        u   -    acau   a    ca 
 ggcgaucg g ucuCUCGAGU  GUGGA GAG AUGGGAGU ggc ggac    gag guuc  c
 |||||||| | ||||||||||  ||||| ||| |||||||| ||| ||||    ||| ||||   
 cugcuagc c ggaGAGCUCG  CGCCU CUC UACUCUca ccg ccug    cuc caag  c
-        g u          CC     A   -        c   a    ----   -    ua 

Annotation confidence Medium

Genome context

ref|NC_046683.1|: 18638035-18638154 [-]

Mature dps-miR-2576-5p

• Accession: MIMAT0012422
• Description: Drosophila pseudoobscura dps-miR-2576-5p mature miRNA
• Sequence: 15 - CUCGAGUGUGGAGAGCAUGGGAGU - 38
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2576-3p

• Accession: MIMAT0053450
• Description: Drosophila pseudoobscura dps-miR-2576-3p mature miRNA
• Sequence: 83 - UCUCAUCUCAUCCGCCCGCUCGAG - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9