Stem-loop dps-mir-2576-2

Accession

MI0011728

Description

Drosophila pseudoobscura dps-mir-2576-2 precursor miRNA

Sequence

5621 reads, 62.0 reads per million, 19 experiments

cggcgaucgggucuCUCGAGUGUGGAGAGCAUGGGAGUuggcggacacaugaguguuccaccaugaaccucguccaggccacUCUCAUCUCAUCCGCCCGCUCGAGaggucgcgaucguc
.((((((((.(((((((((((((((((((.((((((((.(((((((....(((.((((......)))))))))))..)))))))))))))).)))))..)))))))))).).))))))))

Structure

c        g -          --     -   C        u   --    acau   u    ca 
 ggcgaucg g ucuCUCGAGU  GUGGA GAG AUGGGAGU ggc  ggac    gag guuc  c
 |||||||| | ||||||||||  ||||| ||| |||||||| |||  ||||    ||| ||||   
 cugcuagc c ggaGAGCUCG  CGCCU CUC UACUCUca ccg  ccug    cuc caag  c
-        g u          CC     A   -        -   ga    ----   -    ua 

Annotation confidence Medium

Genome context

ref|NW_022881705.1|: 63988-64107 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dps-mir-2576-2

Mature dps-miR-2576-5p

• Accession: MIMAT0012422
• Description: Drosophila pseudoobscura dps-miR-2576-5p mature miRNA
• Sequence: 15 - CUCGAGUGUGGAGAGCAUGGGAGU - 38
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2576-3p

• Accession: MIMAT0053450
• Description: Drosophila pseudoobscura dps-miR-2576-3p mature miRNA
• Sequence: 83 - UCUCAUCUCAUCCGCCCGCUCGAG - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9