Stem-loop aae-mir-184

Accession

MI0013433

Description

Aedes aegypti aae-mir-184 precursor miRNA

Literature search

6 open access papers mention aae-mir-184
(14 sentences)

Sequence

15495091 reads, 84736.0 reads per million, 91 experiments

ccgguguauucguacCCUUAUCAUUCUUGCGCCCCGUguuauauuguuggcgacUGGACGGAGAACUGAUAAGGGCccgggucaccuu
..((((.(((((..((((((((((((((.((.((.((((((......)))).)).)).))))))).)))))))))..)))))))))..

Structure

cc    u     ua         -     G  C  C  -    ua 
  ggug auucg  cCCUUAUCA UUCUU CG CC GU guua  u
  |||| |||||  ||||||||| ||||| || || || ||||   
  ccac ugggc  GGGAAUAGU AAGAG GC GG ca cggu  u
uu    -     cC         C     -  A  U  g    ug 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811236.1|: 143366-143453 [-]

Mature aae-miR-184-5p

• Accession: MIMAT0057320
• Description: Aedes aegypti aae-miR-184-5p mature miRNA
• Sequence: 16 - CCUUAUCAUUCUUGCGCCCCGU - 37
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-184-3p

• Accession: MIMAT0014207
• Description: Aedes aegypti aae-miR-184-3p mature miRNA
• Sequence: 55 - UGGACGGAGAACUGAUAAGGGC - 76
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119