Stem-loop aae-mir-14

Accession

MI0013452

Description

Aedes aegypti aae-mir-14 precursor miRNA

Literature search

2 open access papers mention aae-mir-14
(31 sentences)

Sequence

31481 reads, 1618 reads per million, 2 experiments

guggaauuacaccucaacgaauuugaacucugcucuacccgauaagccugugggagcgagauuaaggcuugcuggucauuuauuacacucgaagUCAGUCUUUUUCUCUCUCCUAUugguauaacgguguuucaacgaguccgaguucccgcaccguagucauccacaucauc
((((((((((........(((((((.((((......(((((.((.(((.(((((((.((((..((((((.(((...................))).))))))..)))).))))))).))).)).))).))......)))).))))))).......)))))..)))))......

Structure

------     --     accucaac       a    ugcucu  -   a  a   u       c    uu      u   ggucauuu 
      gugga  auuac        gaauuug acuc      ac ccg ua gcc gugggag gaga  aaggcu gcu        a
      |||||  |||||        ||||||| ||||      || ||| || ||| ||||||| ||||  |||||| |||        u
      caccu  ugaug        cuugagc ugag      ug ggc au ugg UAUCCUC CUCU  UUCUGA Uga        u
cuacua     ac     -ccacgcc       c    caacuu  u   a  a   u       U    UU      C   agcucaca 

Annotation confidence Low

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.249: 1088962-1089134 [-]

Mature aae-miR-14

• Accession: MIMAT0014240
• Description: Aedes aegypti aae-miR-14 mature miRNA
• Sequence: 95 - UCAGUCUUUUUCUCUCUCCUAU - 116
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119