Stem-loop aae-mir-190

Accession

MI0013454

Description

Aedes aegypti aae-mir-190 precursor miRNA

Literature search

1 open access papers mention aae-mir-190
(3 sentences)

Sequence

437889 reads, 3154.0 reads per million, 80 experiments

gggugauuccggugAGAUAUGUUUGAUAUUCUUGGUUGuuaaauuuuauauuaucaCCCAGGAAUCAAACAUAUUAUUacuguggucaucaugagacuucg
.(((((((.((((((((((((((((((..((((((.((.(((........))).)).)))))))))))))))))).)))))).)))))))...........

Structure

----------g       c      -            AU      U  u   auu 
           ggugauu cggugA GAUAUGUUUGAU  UCUUGG UG uaa   u
           ||||||| |||||| ||||||||||||  |||||| || |||    
           cuacugg gucaUU UUAUACAAACUA  AGGACC ac auu   u
gcuucagagua       u      A            --      C  u   aua 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001810750.1|: 82191-82291 [-]

Mature aae-miR-190-5p

• Accession: MIMAT0014243
• Description: Aedes aegypti aae-miR-190-5p mature miRNA
• Sequence: 15 - AGAUAUGUUUGAUAUUCUUGGUUG - 38
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-190-3p

• Accession: MIMAT0057325
• Description: Aedes aegypti aae-miR-190-3p mature miRNA
• Sequence: 57 - CCCAGGAAUCAAACAUAUUAUU - 78
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119