Stem-loop aae-mir-957

Accession

MI0013458

Description

Aedes aegypti aae-mir-957 precursor miRNA

Sequence

349769 reads, 2998.0 reads per million, 79 experiments

uccggcGUUAGUUUUGGGCGGGUUUUAGUguauuucgauuagaguaucaauUGAAACCGUCCAAAACUGAGGCcggcg
.(((((.((((((((((((((.(((((((((((((......))))))..))))))))))))))))))))).)))))..

Structure

-u     G              G       --      cg 
  ccggc UUAGUUUUGGGCGG UUUUAGU  guauuu  a
  ||||| |||||||||||||| |||||||  ||||||   
  ggcCG AGUCAAAACCUGCC AAAGUua  uaugag  u
gc     G              -       ac      au 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811462.1|: 464288-464365 [+]

Mature aae-miR-957-5p

• Accession: MIMAT0057328
• Description: Aedes aegypti aae-miR-957-5p mature miRNA
• Sequence: 7 - GUUAGUUUUGGGCGGGUUUUAGU - 29
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-957-3p

• Accession: MIMAT0014248
• Description: Aedes aegypti aae-miR-957-3p mature miRNA
• Sequence: 52 - UGAAACCGUCCAAAACUGAGGC - 73
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119