Stem-loop aae-mir-315

Accession

MI0013467

Description

Aedes aegypti aae-mir-315 precursor miRNA

Literature search

1 open access papers mention aae-mir-315
(1 sentences)

Sequence

21891 reads, 1104 reads per million, 2 experiments

aguguuucuauaaaaUUUUGAUUGUUGCUCAGAAAGCcgugcauuugaaacgggucgCUUUCGAGCAGUAAUCAAAGUCaaauaaaacacca
.((((((.(((...((((((((((((((((.(((((((((.........)))....))))))))))))))))))))))...)))))))))..

Structure

-a      c   aaa                A      ----   gca 
  guguuu uau   aUUUUGAUUGUUGCUC GAAAGC    cgu   u
  |||||| |||   |||||||||||||||| ||||||    |||   u
  cacaaa aua   UGAAACUAAUGACGAG CUUUCg    gca   u
ac      -   aaC                -      cugg   aag 

Annotation confidence Medium

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.612: 104128-104219 [+]

Mature aae-miR-315-5p

• Accession: MIMAT0014262
• Description: Aedes aegypti aae-miR-315-5p mature miRNA
• Sequence: 16 - UUUUGAUUGUUGCUCAGAAAGC - 37
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-315-3p

• Accession: MIMAT0015370
• Description: Aedes aegypti aae-miR-315-3p mature miRNA
• Sequence: 58 - CUUUCGAGCAGUAAUCAAAGUC - 79
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119