Stem-loop aae-mir-1891-2

Accession

MI0013469

Description

Aedes aegypti aae-mir-1891-2 precursor miRNA

Literature search

2 open access papers mention aae-mir-1891-2
(5 sentences)

Sequence

256190 reads, 3393.0 reads per million, 87 experiments

aucuuuuuccgucauguUGAGGAGUUAAUUUGCGUGUUUuuguauuugauuaaACACGUCCAUUAACUCUGGUACaugaugauaaaagccaa
..(((((..((((((((...(((((((((..((((((((............))))))))..)))))))))...))))))))..)))))....

Structure

--au     uc        UGA         UU        uugua 
    cuuuu  cgucaugu   GGAGUUAAU  GCGUGUUU     u
    |||||  ||||||||   |||||||||  ||||||||      
    gaaaa  guaguaCA   UCUCAAUUA  UGCACAaa     u
aacc     ua        UGG         CC        uuagu 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811203.1|: 72785-72876 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aae-mir-1891-2

Mature aae-miR-1891-5p

• Accession: MIMAT0014263
• Description: Aedes aegypti aae-miR-1891-5p mature miRNA
• Sequence: 18 - UGAGGAGUUAAUUUGCGUGUUU - 39
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-1891-3p

• Accession: MIMAT0057332
• Description: Aedes aegypti aae-miR-1891-3p mature miRNA
• Sequence: 54 - ACACGUCCAUUAACUCUGGUAC - 75
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119