Stem-loop aae-mir-965

Accession

MI0013474

Description

Aedes aegypti aae-mir-965 precursor miRNA

Literature search

1 open access papers mention aae-mir-965
(3 sentences)

Sequence

11648 reads, 79.0 reads per million, 80 experiments

gauucugaaGGGGGAAAUCCUGUACGCUGUAUGUuguauuugaauaauccaUAAGCGUAUAGCUUUUCCCAUUcggcgu
....(((((..((((((..(((((((((.((((((((......))))..)))))))))))))..)))))).)))))...

Structure

gauu     GG      UC         G    --    au 
    cugaa  GGGAAA  CUGUACGCU UAUG  Uugu  u
    |||||  ||||||  ||||||||| ||||  ||||   
    ggcUU  CCCUUU  GAUAUGCGA AUac  aaua  u
-ugc     -A      UC         -    cu    ag 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811252.1|: 2008650-2008728 [+]

Mature aae-miR-965-5p

• Accession: MIMAT0057336
• Description: Aedes aegypti aae-miR-965-5p mature miRNA
• Sequence: 10 - GGGGGAAAUCCUGUACGCUGUAUGU - 34
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-965-3p

• Accession: MIMAT0014268
• Description: Aedes aegypti aae-miR-965-3p mature miRNA
• Sequence: 52 - UAAGCGUAUAGCUUUUCCCAUU - 73
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119