Stem-loop aae-mir-927

Accession

MI0013476

Description

Aedes aegypti aae-mir-927 precursor miRNA

Literature search

3 open access papers mention aae-mir-927
(8 sentences)

Sequence

373256 reads, 1881.0 reads per million, 83 experiments

gguuugcUUUAGAAUUCCUACGCUUUACCgugauuuguugaaaguuuggCAAAGCGUUUGGGUUCUGAAACgaaac
..((((.((((((((((..(((((((.(((.(((((.....)))))))).)))))))..)))))))))).))))..

Structure

gg    c          CU       A   u     g 
  uuug UUUAGAAUUC  ACGCUUU CCg gauuu u
  |||| ||||||||||  ||||||| ||| ||||| u
  aagC AAGUCUUGGG  UGCGAAA ggu uugaa g
ca    A          UU       C   -     a 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001810970.1|: 2065412-2065487 [+]

Mature aae-miR-927-5p

• Accession: MIMAT0057337
• Description: Aedes aegypti aae-miR-927-5p mature miRNA
• Sequence: 8 - UUUAGAAUUCCUACGCUUUACC - 29
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-927-3p

• Accession: MIMAT0014271
• Description: Aedes aegypti aae-miR-927-3p mature miRNA
• Sequence: 50 - CAAAGCGUUUGGGUUCUGAAAC - 71
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119