Stem-loop aae-mir-285

Accession

MI0013479

Description

Aedes aegypti aae-mir-285 precursor miRNA

Literature search

3 open access papers mention aae-mir-285
(11 sentences)

Sequence

118175 reads, 6083 reads per million, 2 experiments

guuaaucuuccuaaguacuggcuuccaaaggugaguagauggcauucgauacacucUAGCACCAUUCGAAAUCAGUACugaaggcgaagauuuguucugcguga
...(((((((((.((((((((.(((.((.((((..((((((..........)).)))).)))).)).))).))))))))...)).)))))))............

Structure

---------guu       -  --a        c   c  a    ag    -  gcau 
            aaucuuc cu   aguacugg uuc aa ggug  uaga ug    u
            ||||||| ||   |||||||| ||| || ||||  |||| ||     
            uuagaag gg   uCAUGACU AAG UU CCAC  AUcu ac    c
agugcgucuugu       c  aag        A   C  A    -G    c  auag 

Annotation confidence Low

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.23: 3339127-3339230 [-]

Mature aae-miR-285

• Accession: MIMAT0014273
• Description: Aedes aegypti aae-miR-285 mature miRNA
• Sequence: 57 - UAGCACCAUUCGAAAUCAGUAC - 78
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119