Stem-loop aae-mir-10

Accession

MI0013484

Description

Aedes aegypti aae-mir-10 precursor miRNA

Literature search

5 open access papers mention aae-mir-10
(12 sentences)

Sequence

3381868 reads, 13450.0 reads per million, 87 experiments

uuuguucuacaucuACCCUGUAGAUCCGAAUUUGUUugaauauuuaacaagcgaCAAAUUCGGUUCUAGAGAGGUUUguguggggcauu
..((((((((((..(((((.((((.(((((((((((................))))))))))).)))).)).)))..))))))))))..

Structure

uu          cu   -  G    U           ugaauau 
  uguucuacau  ACC CU UAGA CCGAAUUUGUU       u
  ||||||||||  ||| || |||| |||||||||||        
  acggggugug  UGG GA AUCU GGCUUAAACag       u
uu          UU   A  G    U           cgaacaa 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811175.1|: 813543-813631 [+]

Mature aae-miR-10-5p

• Accession: MIMAT0014277
• Description: Aedes aegypti aae-miR-10-5p mature miRNA
• Sequence: 15 - ACCCUGUAGAUCCGAAUUUGUU - 36
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-10-3p

• Accession: MIMAT0057343
• Description: Aedes aegypti aae-miR-10-3p mature miRNA
• Sequence: 55 - CAAAUUCGGUUCUAGAGAGGUUU - 77
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119