Stem-loop aae-mir-283

Accession

MI0013486

Description

Aedes aegypti aae-mir-283 precursor miRNA

Literature search

7 open access papers mention aae-mir-283
(12 sentences)

Sequence

922822 reads, 5214.0 reads per million, 85 experiments

guucgacugaaagguCAAUAUCAGCUGGUAAUUCUGGGCuuaccccaccguuauacgcuuccCGGAAUUCCAACUGAUAUCCACUuuuuagucgagaugguca
.((((((((((((((..(((((((.(((.(((((((((......................)))))))))))).)))))))..)))))))))))))).......

Structure

------g              CA       C   U         Cuuaccccac 
       uucgacugaaaggu  AUAUCAG UGG AAUUCUGGG          c
       ||||||||||||||  ||||||| ||| |||||||||           
       gagcugauuuuUCA  UAUAGUC ACC UUAAGGCcc          g
acuggua              CC       A   -         uucgcauauu 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811440.1|: 2729329-2729431 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aae-mir-283

Mature aae-miR-283-5p

• Accession: MIMAT0014279
• Description: Aedes aegypti aae-miR-283-5p mature miRNA
• Sequence: 16 - CAAUAUCAGCUGGUAAUUCUGGGC - 39
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-283-3p

• Accession: MIMAT0057344
• Description: Aedes aegypti aae-miR-283-3p mature miRNA
• Sequence: 63 - CGGAAUUCCAACUGAUAUCCACU - 85
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119