Stem-loop aae-mir-2941-1

Accession

MI0013491

Description

Aedes aegypti aae-mir-2941-1 precursor miRNA

Literature search

3 open access papers mention aae-mir-2941-1
(9 sentences)

Sequence

746374 reads, 7581.0 reads per million, 75 experiments

auggauuaaguuguaccacuuuCGUGGUGUUUAGACGUAUUACAugauuuuuugaacauaacugUAGUACGGCUAGAACUCCACGGauguuggcaauauagucauc
...(((((.(((((.(.((.(((((((.((((((.(((((((((..................))))))))).)).)))).))))))).)).)))))).)))))...

Structure

aug     a     a c  u       U    -  A         ugauuuuu 
   gauua guugu c ac uuCGUGG GUUU AG CGUAUUACA        u
   ||||| ||||| | || ||||||| |||| || |||||||||         
   cugau uaacg g ug aGGCACC CAAG UC GCAUGAUgu        g
cua     a     - u  u       U    A  G         caauacaa 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811113.1|: 413127-413232 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aae-mir-2941-1

Mature aae-miR-2941-1-5p

• Accession: MIMAT0057346
• Description: Aedes aegypti aae-miR-2941-1-5p mature miRNA
• Sequence: 23 - CGUGGUGUUUAGACGUAUUACA - 44
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-2941-3p

• Accession: MIMAT0014286
• Description: Aedes aegypti aae-miR-2941-3p mature miRNA
• Sequence: 65 - UAGUACGGCUAGAACUCCACGG - 86
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119