Stem-loop aae-mir-2941-2

Accession

MI0013492

Description

Aedes aegypti aae-mir-2941-2 precursor miRNA

Literature search

2 open access papers mention aae-mir-2941-2
(5 sentences)

Sequence

646027 reads, 5753.0 reads per million, 75 experiments

caagaauggcgauuguuCGUGAAGCUCAGCUGCAUUACAcgauauggaauacgguuugUAGUACGGCUAGAACUCCACGGacaauuacauuugua
...(((((..(((((((((((.((.(((((((.((((((.(((.((.....))))))))))).))))).)).)).))))))))))).)))))...

Structure

caa     gc           A  C  -     C      c   a  g 
   gaaug  gauuguuCGUG AG UC AGCUG AUUACA gau ug a
   |||||  ||||||||||| || || ||||| |||||| ||| || a
   uuuac  uuaacaGGCAC UC AG UCGGC UGAUgu uug gc u
aug     -a           C  A  A     A      -   -  a 

Annotation confidence Not enough data

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811113.1|: 413436-413530 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aae-mir-2941-2

Mature aae-miR-2941-2-5p

• Accession: MIMAT0057347
• Description: Aedes aegypti aae-miR-2941-2-5p mature miRNA
• Sequence: 18 - CGUGAAGCUCAGCUGCAUUACA - 39
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-2941-3p

• Accession: MIMAT0014286
• Description: Aedes aegypti aae-miR-2941-3p mature miRNA
• Sequence: 59 - UAGUACGGCUAGAACUCCACGG - 80
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119