Stem-loop aae-mir-33

Accession

MI0013493

Description

Aedes aegypti aae-mir-33 precursor miRNA

Literature search

5 open access papers mention aae-mir-33
(53 sentences)

Sequence

46611 reads, 157.0 reads per million, 80 experiments

ccacccggGUGCAUUGUAGUUGCAUUGCAcuuuugcguucgauaacacggugCAAUACUUCUGCAAUGCAAGCCaggugg
(((((.((.((((((((((..(.((((((((...(.(((....))).))))))))).)..))))))))))..)).)))))

Structure

     c  -G          UU C        uuu c   c 
ccacc gg  UGCAUUGUAG  G AUUGCAcu   g guu g
||||| ||  ||||||||||  | ||||||||   | |||  
ggugg CC  ACGUAACGUC  C UAACgugg   c caa a
     a  GA          UU A        --- a   u 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811226.1|: 351648-351727 [+]

Mature aae-miR-33-5p

• Accession: MIMAT0014287
• Description: Aedes aegypti aae-miR-33-5p mature miRNA
• Sequence: 9 - GUGCAUUGUAGUUGCAUUGCA - 29
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-33-3p

• Accession: MIMAT0061501
• Description: Aedes aegypti aae-miR-33-3p mature miRNA
• Sequence: 53 - CAAUACUUCUGCAAUGCAAGCC - 74
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119