Stem-loop aae-mir-7

Accession

MI0013496

Description

Aedes aegypti aae-mir-7 precursor miRNA

Literature search

2 open access papers mention aae-mir-7
(10 sentences)

Sequence

1495961 reads, 7783.0 reads per million, 88 experiments

ucgcaauauuuuguaUGGAAGACUAGUGAUUUUGUUGUuuugcuuacgauaauaaCAAUAAAUCUCAAGUCUUUCUAcaaaguuugcug
..((((.((((((((.((((((((.(.(((((((((((((((....))).)))))))..))))).).))))))))))))))))))))..

Structure

uc    u        U        A U     --       -   c 
  gcaa auuuugua GGAAGACU G GAUUU  UGUUGUu uug u
  |||| |||||||| |||||||| | |||||  ||||||| |||  
  cguu ugaaacAU CUUUCUGA C CUAAA  ACaauaa agc u
gu    -        -        A U     UA       u   a 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001810199.1|: 46026-46114 [+]

Mature aae-miR-7-5p

• Accession: MIMAT0014290
• Description: Aedes aegypti aae-miR-7-5p mature miRNA
• Sequence: 16 - UGGAAGACUAGUGAUUUUGUUGU - 38
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-7-3p

• Accession: MIMAT0057349
• Description: Aedes aegypti aae-miR-7-3p mature miRNA
• Sequence: 56 - CAAUAAAUCUCAAGUCUUUCUA - 77
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119