Stem-loop aae-mir-970

Accession

MI0013498

Description

Aedes aegypti aae-mir-970 precursor miRNA

Literature search

1 open access papers mention aae-mir-970
(1 sentences)

Sequence

540737 reads, 2528.0 reads per million, 89 experiments

aacgguauugcggcuuucauagguAGCUUGCGUUUGUCUUAGCUGGUAUugaaugugauagguaUCAUAAGACACACGCGGCUAUuuuugagaguaucaagcaucuug
...(((.(((..(((((((.((((((((.((((.(((((((..(((((((..........)))))))))))))).)))))))))))).)))))))..)))..)))...

Structure

aac   -a   cg       u        U    U       GC       gaau 
   ggu  uug  gcuuuca agguAGCU GCGU UGUCUUA  UGGUAUu    g
   |||  |||  ||||||| |||||||| |||| |||||||  |||||||     
   cua  aac  ugagagu uuUAUCGG CGCA ACAGAAU  ACUaugg    u
guu   cg   ua       u        -    C       --       auag 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001810909.1|: 1045811-1045918 [+]

Mature aae-miR-970-5p

• Accession: MIMAT0057351
• Description: Aedes aegypti aae-miR-970-5p mature miRNA
• Sequence: 25 - AGCUUGCGUUUGUCUUAGCUGGUAU - 49
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-970-3p

• Accession: MIMAT0014292
• Description: Aedes aegypti aae-miR-970-3p mature miRNA
• Sequence: 65 - UCAUAAGACACACGCGGCUAU - 85
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119